This study presents a possible use of anisotropy of magnetic susceptibility (AMS) to describe the mineralizing process in hydrothermal systems. Ba–F–Fe-rich deposits within the Chaillac Basin are on the southern border of the Paris Basin. In these deposits hydrothermal textures and tectonic structures have been described in veins, sinters, and sandstone cemented by hydrothermal goethite. 278 oriented cores from 24 sites have been collected in these formations. In addition, a lateritic duricrust superimposed on the hydrothermal formation has been sampled. Rock magnetic investigations show that the principal magnetic carrier is goethite for the hydrothermal mineralization and for the laterite level. The AMS measurements show distinguishable behaviors in the different mineralogical and geological contexts. The K1 magnetic lineation (maximum axis) is strongly inclined for the vertical veins. For the horizontally mineralized sinters, the magnetic lineation is almost horizontal with an azimuth similar to the sedimentary flow direction. The AMS of goethite-rich sandstone close to the veins shows strongly inclined K1 as they are probably influenced by the vertical veins; however, when the distance from the vein is larger than 1 m, the AMS presents rather horizontal K1 directions, parallel to the sedimentary flow. The laterite has a foliation dominance of AMS with vertically well-grouped K3 axes and scattered K1 and K2 axes. Field structural observations suggest that the ore deposit is mainly controlled by EW extension tectonics associated with NS trending normal faults. Combining the AMS results on the deposit with vein textures and field data a model is proposed in which AMS results are interpreted in terms of hydrothermal fluid flow. This work opens a new investigation field to constrain hydrodynamic models using the AMS method. Textural study combined with efficient AMS fabric measurements should be used for systematic investigation to trace flow direction in fissures and in sand porosity.