Competition between low-density bacteria as an unexpected factor regulating carbon mineralization in bulk soil
Résumé
Bacterial decomposition of organic matter in soils is generally believed to be mainly controlled by the accessibility of bacteria to their substrate. The influence of bacterial metabolic traits on this control has however received little attention in highly heterogeneous spatial conditions under advective-dispersive transport of bacteria and substrates. Here, we develop a bioreactive transport model to screen the interactive impacts of dispersion and metabolic traits on mineralization. We compare the model results with two sets of previously performed cm-scale soil-core experiments in which the mineralization of the pesticide 2,4-D was measured under well-controlled initial distributions and transport conditions. Bacterial dispersion away from the initial location of substrate induced a significant increase in 2,4-D mineralization, revealing the existence of a control of decomposition by the bacterial density, in addition to the dilution of substrate concentration. This regulation of degradation by density becomes dominant for bacteria with an efficient uptake of substrate at low substrate concentrations ( a common feature of oligotrophs). The model output suggests that the distance between bacteria adapted to oligotrophic environments is a stronger regulatorof degradation than the distance between these bacteria and the substrate initial location. Such oligotrophs, commonly found in soils, compete with each other for substrate even under remarkably low population densities. The ratio-dependent Contois growth model, which includes a density regulation in the expression of the uptake efficiency, appears more versatile and accurate than the substrate-dependent Monod model. In view of their stronginteractions, bioreactive and transport processes cannot be handled independently but should be integrated, in particular when reactive processes of interest are carried out by oligotrophs.
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